Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lima1Q9ERG0 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lima1Q9ERG0 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lima1Q9ERG0 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Lima1Q9ERG0 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Gm27405-201ENSMUST00000184201 112 ntBASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Haglr-201ENSMUST00000100000 2085 ntBASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lima1Q9ERG0 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms