Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim47Q8C0E3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim47Q8C0E3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Gm11539-201ENSMUST00000119837 557 ntBASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Gm13436-201ENSMUST00000120418 567 ntBASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.41■□□□□ 0.7
Trim47Q8C0E3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim47Q8C0E3 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.4■□□□□ 0.7
Trim47Q8C0E3 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim47Q8C0E3 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
Trim47Q8C0E3 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Trim47Q8C0E3 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Gm13559-201ENSMUST00000120476 863 ntBASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Mir8112-201ENSMUST00000184382 131 ntBASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim47Q8C0E3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim47Q8C0E3 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms