Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Gm3375-201ENSMUST00000203929 796 ntBASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig4Q8BTF7 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig4Q8BTF7 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Gm15565-201ENSMUST00000118890 427 ntBASIC18.56■□□□□ 0.56
Lig4Q8BTF7 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lig4Q8BTF7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Gm30025-201ENSMUST00000218555 728 ntBASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lig4Q8BTF7 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lig4Q8BTF7 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms