Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sh3rf1Q69ZI1 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Sh3rf1Q69ZI1 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sh3rf1Q69ZI1 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.77■□□□□ 0.43
Sh3rf1Q69ZI1 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sh3rf1Q69ZI1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Mir7071-201ENSMUST00000184847 69 ntBASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh3rf1Q69ZI1 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sh3rf1Q69ZI1 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sh3rf1Q69ZI1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh3rf1Q69ZI1 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms