Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3bQ3ULL6 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Gm12382-201ENSMUST00000122005 922 ntBASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Upf3bQ3ULL6 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Gm6576-201ENSMUST00000169678 883 ntBASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Upf3bQ3ULL6 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Gm13401-201ENSMUST00000117074 291 ntBASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Gm10812-201ENSMUST00000099864 546 ntBASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.78■□□□□ 0.6
Upf3bQ3ULL6 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3bQ3ULL6 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf3bQ3ULL6 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf3bQ3ULL6 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3bQ3ULL6 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3bQ3ULL6 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms