Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
Sox1P53783 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.96■□□□□ 0.47
Sox1P53783 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox1P53783 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Sox1P53783 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.95■□□□□ 0.46
Sox1P53783 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Sox1P53783 Rps4l-201ENSMUST00000071745 943 ntBASIC17.95■□□□□ 0.46
Sox1P53783 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox1P53783 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Sox1P53783 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Sox1P53783 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.94■□□□□ 0.46
Sox1P53783 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.94■□□□□ 0.46
Sox1P53783 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.94■□□□□ 0.46
Sox1P53783 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
Sox1P53783 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.94■□□□□ 0.46
Sox1P53783 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Sox1P53783 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox1P53783 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Sox1P53783 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.93■□□□□ 0.46
Sox1P53783 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.93■□□□□ 0.46
Sox1P53783 Il3ra-202ENSMUST00000223589 738 ntBASIC17.93■□□□□ 0.46
Sox1P53783 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox1P53783 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.93■□□□□ 0.46
Sox1P53783 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Sox1P53783 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.92■□□□□ 0.46
Sox1P53783 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.92■□□□□ 0.46
Sox1P53783 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.92■□□□□ 0.46
Sox1P53783 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Sox1P53783 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Sox1P53783 Actl10-202ENSMUST00000226583 1501 ntBASIC17.92■□□□□ 0.46
Sox1P53783 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox1P53783 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Sox1P53783 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox1P53783 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox1P53783 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Sox1P53783 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Sox1P53783 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sox1P53783 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.91■□□□□ 0.46
Sox1P53783 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
Sox1P53783 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.91■□□□□ 0.46
Sox1P53783 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sox1P53783 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.91■□□□□ 0.46
Sox1P53783 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.91■□□□□ 0.46
Sox1P53783 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms