Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col3a1P08121 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Col3a1P08121 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col3a1P08121 Gm19721-201ENSMUST00000195284 1764 ntBASIC21.06■□□□□ 0.96
Col3a1P08121 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC21.05■□□□□ 0.96
Col3a1P08121 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Col3a1P08121 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Col3a1P08121 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC21.05■□□□□ 0.96
Col3a1P08121 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC21.05■□□□□ 0.96
Col3a1P08121 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC21.05■□□□□ 0.96
Col3a1P08121 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col3a1P08121 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Col3a1P08121 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC21.04■□□□□ 0.96
Col3a1P08121 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col3a1P08121 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC21.03■□□□□ 0.96
Col3a1P08121 Gm21559-201ENSMUST00000220638 855 ntBASIC21.03■□□□□ 0.96
Col3a1P08121 AC154471.1-201ENSMUST00000224418 436 ntBASIC21.03■□□□□ 0.96
Col3a1P08121 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 Gm8587-201ENSMUST00000076538 843 ntBASIC21.03■□□□□ 0.96
Col3a1P08121 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Col3a1P08121 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col3a1P08121 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
Col3a1P08121 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Col3a1P08121 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Col3a1P08121 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC21.02■□□□□ 0.96
Col3a1P08121 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col3a1P08121 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Col3a1P08121 Gm7213-201ENSMUST00000215977 950 ntBASIC21.01■□□□□ 0.95
Col3a1P08121 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
Col3a1P08121 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC21.01■□□□□ 0.95
Col3a1P08121 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC21.01■□□□□ 0.95
Col3a1P08121 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC21.01■□□□□ 0.95
Col3a1P08121 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC21.01■□□□□ 0.95
Col3a1P08121 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col3a1P08121 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Col3a1P08121 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Col3a1P08121 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col3a1P08121 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Col3a1P08121 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col3a1P08121 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
Col3a1P08121 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col3a1P08121 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col3a1P08121 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms