Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Rab3c-203ENSMUST00000224180 967 ntBASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Gm10812-201ENSMUST00000099864 546 ntBASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh3rf1Q69ZI1 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh3rf1Q69ZI1 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sh3rf1Q69ZI1 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sh3rf1Q69ZI1 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh3rf1Q69ZI1 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Sh3rf1Q69ZI1 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Sh3rf1Q69ZI1 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.83■□□□□ 0.45
Sh3rf1Q69ZI1 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Sh3rf1Q69ZI1 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Sh3rf1Q69ZI1 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Gm27275-201ENSMUST00000184318 272 ntBASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sh3rf1Q69ZI1 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms