Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trem3Q9JKE1 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trem3Q9JKE1 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trem3Q9JKE1 Idnk-204ENSMUST00000226010 1898 ntBASIC14.33□□□□□ -0.11
Trem3Q9JKE1 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trem3Q9JKE1 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trem3Q9JKE1 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Gm43294-201ENSMUST00000202850 2490 ntBASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Gm6420-201ENSMUST00000193885 723 ntBASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Gm42778-201ENSMUST00000199644 553 ntBASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem3Q9JKE1 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Nespas-201ENSMUST00000143738 1083 ntBASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trem3Q9JKE1 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Gm43338-201ENSMUST00000198617 2223 ntBASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem3Q9JKE1 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Gm37563-201ENSMUST00000192580 1513 ntBASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem3Q9JKE1 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trem3Q9JKE1 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trem3Q9JKE1 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trem3Q9JKE1 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms