Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn5aQ9JJV9 Gm17808-201ENSMUST00000200859 894 ntBASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn5aQ9JJV9 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Scn5aQ9JJV9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Gm21559-201ENSMUST00000220638 855 ntBASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Gm8587-201ENSMUST00000076538 843 ntBASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn5aQ9JJV9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn5aQ9JJV9 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Gm27389-201ENSMUST00000183622 195 ntBASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Gm7213-201ENSMUST00000215977 950 ntBASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn5aQ9JJV9 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn5aQ9JJV9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Il3ra-202ENSMUST00000223589 738 ntBASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Gm7461-201ENSMUST00000058918 827 ntBASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn5aQ9JJV9 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn5aQ9JJV9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Scn5aQ9JJV9 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Scn5aQ9JJV9 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn5aQ9JJV9 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn5aQ9JJV9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms