Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3bQ3ULL6 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3bQ3ULL6 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3bQ3ULL6 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Gm15378-201ENSMUST00000121894 207 ntBASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Gm18025-201ENSMUST00000221733 862 ntBASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Upf3bQ3ULL6 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Upf3bQ3ULL6 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Idnk-204ENSMUST00000226010 1898 ntBASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Gm10418-201ENSMUST00000100943 576 ntBASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Upf3bQ3ULL6 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Gm22240-201ENSMUST00000175225 82 ntBASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Gm42545-201ENSMUST00000202755 922 ntBASIC18.88■□□□□ 0.61
Upf3bQ3ULL6 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms