Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Gm22325-201ENSMUST00000158904 308 ntBASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Gm6420-201ENSMUST00000193885 723 ntBASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
H2afb1S4R1E0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Gm18671-201ENSMUST00000214826 683 ntBASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
H2afb1S4R1E0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
H2afb1S4R1E0 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Nespas-201ENSMUST00000143738 1083 ntBASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Gm7514-201ENSMUST00000209475 934 ntBASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
H2afb1S4R1E0 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H2afb1S4R1E0 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
H2afb1S4R1E0 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
H2afb1S4R1E0 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
H2afb1S4R1E0 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H2afb1S4R1E0 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H2afb1S4R1E0 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms