Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.54■□□□□ 0.4
Lima1Q9ERG0 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Lima1Q9ERG0 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lima1Q9ERG0 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Lima1Q9ERG0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lima1Q9ERG0 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Lima1Q9ERG0 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lima1Q9ERG0 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lima1Q9ERG0 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Gm18671-201ENSMUST00000214826 683 ntBASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Lima1Q9ERG0 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.5■□□□□ 0.39
Lima1Q9ERG0 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms