Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Gm37519-201ENSMUST00000191687 2210 ntBASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc9Q8VC31 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Gm13216-201ENSMUST00000117145 591 ntBASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Ccdc9Q8VC31 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ccdc9Q8VC31 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc9Q8VC31 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC21.34■■□□□ 1.01
Ccdc9Q8VC31 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Gm14117-201ENSMUST00000122417 843 ntBASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc9Q8VC31 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc9Q8VC31 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc9Q8VC31 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc9Q8VC31 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc9Q8VC31 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc9Q8VC31 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Gm22238-201ENSMUST00000175222 88 ntBASIC21.32■■□□□ 1
Ccdc9Q8VC31 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc9Q8VC31 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc9Q8VC31 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms