Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC21■□□□□ 0.95
Trim56Q80VI1 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
Trim56Q80VI1 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim56Q80VI1 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim56Q80VI1 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.98■□□□□ 0.95
Trim56Q80VI1 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim56Q80VI1 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim56Q80VI1 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.96■□□□□ 0.95
Trim56Q80VI1 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim56Q80VI1 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Gm16042-201ENSMUST00000204813 1247 ntBASIC20.95■□□□□ 0.94
Trim56Q80VI1 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.95■□□□□ 0.94
Trim56Q80VI1 Rarb-207ENSMUST00000225921 2756 ntBASIC20.95■□□□□ 0.94
Trim56Q80VI1 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.94■□□□□ 0.94
Trim56Q80VI1 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.94■□□□□ 0.94
Trim56Q80VI1 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Trim56Q80VI1 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim56Q80VI1 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.93■□□□□ 0.94
Trim56Q80VI1 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Mir5122-201ENSMUST00000175004 89 ntBASIC20.93■□□□□ 0.94
Trim56Q80VI1 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Trim56Q80VI1 Gm10517-202ENSMUST00000192970 758 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms