Protein–RNA interactions for Protein: Q6P9Z1

Smarcd3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd3Q6P9Z1 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smarcd3Q6P9Z1 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Nespas-201ENSMUST00000143738 1083 ntBASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.29■□□□□ 0.2
Smarcd3Q6P9Z1 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.28■□□□□ 0.2
Smarcd3Q6P9Z1 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smarcd3Q6P9Z1 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Smarcd3Q6P9Z1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Smarcd3Q6P9Z1 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Smarcd3Q6P9Z1 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Smarcd3Q6P9Z1 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Gm8969-201ENSMUST00000199694 526 ntBASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smarcd3Q6P9Z1 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Gm18284-201ENSMUST00000172604 624 ntBASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Gm7514-201ENSMUST00000209475 934 ntBASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.25■□□□□ 0.19
Smarcd3Q6P9Z1 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms