Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CtcfQ61164 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CtcfQ61164 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CtcfQ61164 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.51■□□□□ 0.71
CtcfQ61164 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
CtcfQ61164 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CtcfQ61164 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.51■□□□□ 0.71
CtcfQ61164 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CtcfQ61164 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CtcfQ61164 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.5■□□□□ 0.71
CtcfQ61164 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CtcfQ61164 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.5■□□□□ 0.71
CtcfQ61164 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CtcfQ61164 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CtcfQ61164 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CtcfQ61164 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CtcfQ61164 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CtcfQ61164 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CtcfQ61164 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CtcfQ61164 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.49■□□□□ 0.71
CtcfQ61164 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CtcfQ61164 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.48■□□□□ 0.71
CtcfQ61164 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
CtcfQ61164 AV356131-201ENSMUST00000206201 750 ntBASIC19.48■□□□□ 0.71
CtcfQ61164 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.48■□□□□ 0.71
CtcfQ61164 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CtcfQ61164 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.47■□□□□ 0.71
CtcfQ61164 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.47■□□□□ 0.71
CtcfQ61164 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.47■□□□□ 0.71
CtcfQ61164 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.47■□□□□ 0.71
CtcfQ61164 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.47■□□□□ 0.71
CtcfQ61164 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.47■□□□□ 0.71
CtcfQ61164 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CtcfQ61164 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CtcfQ61164 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.46■□□□□ 0.71
CtcfQ61164 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Idnk-204ENSMUST00000226010 1898 ntBASIC19.46■□□□□ 0.71
CtcfQ61164 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CtcfQ61164 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms