Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col28a1Q2UY11 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.24■□□□□ 0.35
Col28a1Q2UY11 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col28a1Q2UY11 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col28a1Q2UY11 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.23■□□□□ 0.35
Col28a1Q2UY11 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col28a1Q2UY11 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Col28a1Q2UY11 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col28a1Q2UY11 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.2■□□□□ 0.34
Col28a1Q2UY11 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col28a1Q2UY11 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col28a1Q2UY11 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col28a1Q2UY11 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms