Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Lig3P97386 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Lig3P97386 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Lig3P97386 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Lig3P97386 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig3P97386 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Lig3P97386 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig3P97386 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lig3P97386 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.3■□□□□ 0.68
Lig3P97386 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.3■□□□□ 0.68
Lig3P97386 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.3■□□□□ 0.68
Lig3P97386 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Lig3P97386 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig3P97386 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lig3P97386 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
Lig3P97386 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.29■□□□□ 0.68
Lig3P97386 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.29■□□□□ 0.68
Lig3P97386 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.29■□□□□ 0.68
Lig3P97386 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.29■□□□□ 0.68
Lig3P97386 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Gm5417-201ENSMUST00000079706 384 ntBASIC19.29■□□□□ 0.68
Lig3P97386 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig3P97386 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Lig3P97386 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.28■□□□□ 0.68
Lig3P97386 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.28■□□□□ 0.68
Lig3P97386 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.28■□□□□ 0.68
Lig3P97386 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.28■□□□□ 0.68
Lig3P97386 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Lig3P97386 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Lig3P97386 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig3P97386 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Lig3P97386 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.27■□□□□ 0.68
Lig3P97386 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.27■□□□□ 0.68
Lig3P97386 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Lig3P97386 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.27■□□□□ 0.68
Lig3P97386 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Lig3P97386 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Lig3P97386 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Lig3P97386 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Lig3P97386 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Lig3P97386 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Lig3P97386 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.26■□□□□ 0.67
Lig3P97386 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.26■□□□□ 0.67
Lig3P97386 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.26■□□□□ 0.67
Lig3P97386 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.26■□□□□ 0.67
Lig3P97386 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Lig3P97386 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lig3P97386 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Lig3P97386 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.25■□□□□ 0.67
Lig3P97386 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.25■□□□□ 0.67
Lig3P97386 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Lig3P97386 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Lig3P97386 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms