Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
Col1a1P11087 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.84■□□□□ 0.93
Col1a1P11087 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Mir3081-201ENSMUST00000175305 84 ntBASIC20.84■□□□□ 0.93
Col1a1P11087 AC120002.2-201ENSMUST00000220205 773 ntBASIC20.84■□□□□ 0.93
Col1a1P11087 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.93
Col1a1P11087 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC20.83■□□□□ 0.93
Col1a1P11087 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col1a1P11087 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col1a1P11087 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Col1a1P11087 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.83■□□□□ 0.93
Col1a1P11087 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col1a1P11087 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col1a1P11087 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Col1a1P11087 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col1a1P11087 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col1a1P11087 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Col1a1P11087 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col1a1P11087 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Col1a1P11087 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col1a1P11087 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col1a1P11087 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Col1a1P11087 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col1a1P11087 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Col1a1P11087 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col1a1P11087 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Col1a1P11087 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.81■□□□□ 0.92
Col1a1P11087 AC133598.3-202ENSMUST00000224219 531 ntBASIC20.81■□□□□ 0.92
Col1a1P11087 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.81■□□□□ 0.92
Col1a1P11087 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Col1a1P11087 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Col1a1P11087 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.81■□□□□ 0.92
Col1a1P11087 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col1a1P11087 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.8■□□□□ 0.92
Col1a1P11087 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Col1a1P11087 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.8■□□□□ 0.92
Col1a1P11087 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col1a1P11087 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.8■□□□□ 0.92
Col1a1P11087 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC20.8■□□□□ 0.92
Col1a1P11087 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Col1a1P11087 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC20.8■□□□□ 0.92
Col1a1P11087 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Col1a1P11087 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.8■□□□□ 0.92
Col1a1P11087 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Col1a1P11087 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.79■□□□□ 0.92
Col1a1P11087 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Tgds-204ENSMUST00000228543 1594 ntBASIC20.79■□□□□ 0.92
Col1a1P11087 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.79■□□□□ 0.92
Col1a1P11087 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
Col1a1P11087 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col1a1P11087 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.78■□□□□ 0.92
Col1a1P11087 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
Col1a1P11087 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Col1a1P11087 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Gm26039-201ENSMUST00000158152 144 ntBASIC20.78■□□□□ 0.92
Col1a1P11087 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col1a1P11087 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col1a1P11087 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Col1a1P11087 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Col1a1P11087 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.77■□□□□ 0.92
Col1a1P11087 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms