Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Hmgb3O54879 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Hmgb3O54879 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Hmgb3O54879 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Hmgb3O54879 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Hmgb3O54879 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Hmgb3O54879 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC14.75□□□□□ -0.05
Hmgb3O54879 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Hmgb3O54879 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC14.75□□□□□ -0.05
Hmgb3O54879 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Hmgb3O54879 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Gm7860-201ENSMUST00000121190 879 ntBASIC14.74□□□□□ -0.05
Hmgb3O54879 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb3O54879 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb3O54879 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC14.73□□□□□ -0.05
Hmgb3O54879 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
Hmgb3O54879 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Hmgb3O54879 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC14.73□□□□□ -0.05
Hmgb3O54879 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Hmgb3O54879 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb3O54879 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Gm15546-201ENSMUST00000122095 826 ntBASIC14.72□□□□□ -0.05
Hmgb3O54879 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC14.72□□□□□ -0.05
Hmgb3O54879 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC14.72□□□□□ -0.05
Hmgb3O54879 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb3O54879 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Hmgb3O54879 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Hmgb3O54879 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC14.72□□□□□ -0.05
Hmgb3O54879 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Hmgb3O54879 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC14.71□□□□□ -0.05
Hmgb3O54879 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Hmgb3O54879 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms