Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
H2afb1S4R1E0 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
H2afb1S4R1E0 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
H2afb1S4R1E0 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
H2afb1S4R1E0 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
H2afb1S4R1E0 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.76■■□□□ 1.07
H2afb1S4R1E0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
H2afb1S4R1E0 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
H2afb1S4R1E0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
H2afb1S4R1E0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
H2afb1S4R1E0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
H2afb1S4R1E0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
H2afb1S4R1E0 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
H2afb1S4R1E0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
H2afb1S4R1E0 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
H2afb1S4R1E0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
H2afb1S4R1E0 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.73■■□□□ 1.07
H2afb1S4R1E0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.73■■□□□ 1.07
H2afb1S4R1E0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
H2afb1S4R1E0 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
H2afb1S4R1E0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
H2afb1S4R1E0 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
H2afb1S4R1E0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
H2afb1S4R1E0 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
H2afb1S4R1E0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
H2afb1S4R1E0 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
H2afb1S4R1E0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
H2afb1S4R1E0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
H2afb1S4R1E0 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
H2afb1S4R1E0 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
H2afb1S4R1E0 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
H2afb1S4R1E0 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
H2afb1S4R1E0 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
H2afb1S4R1E0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
H2afb1S4R1E0 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
H2afb1S4R1E0 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
H2afb1S4R1E0 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
H2afb1S4R1E0 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
H2afb1S4R1E0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.65■■□□□ 1.06
H2afb1S4R1E0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
H2afb1S4R1E0 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
H2afb1S4R1E0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
H2afb1S4R1E0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
H2afb1S4R1E0 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.64■■□□□ 1.05
H2afb1S4R1E0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
H2afb1S4R1E0 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
H2afb1S4R1E0 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
H2afb1S4R1E0 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb1S4R1E0 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb1S4R1E0 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb1S4R1E0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.6■■□□□ 1.05
H2afb1S4R1E0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb1S4R1E0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb1S4R1E0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
H2afb1S4R1E0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC21.59■■□□□ 1.05
H2afb1S4R1E0 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
H2afb1S4R1E0 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
H2afb1S4R1E0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
H2afb1S4R1E0 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
H2afb1S4R1E0 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
H2afb1S4R1E0 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
H2afb1S4R1E0 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
H2afb1S4R1E0 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb1S4R1E0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb1S4R1E0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb1S4R1E0 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
H2afb1S4R1E0 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb1S4R1E0 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
H2afb1S4R1E0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.55■■□□□ 1.04
H2afb1S4R1E0 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
H2afb1S4R1E0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb1S4R1E0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb1S4R1E0 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb1S4R1E0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb1S4R1E0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
H2afb1S4R1E0 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
H2afb1S4R1E0 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
H2afb1S4R1E0 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
H2afb1S4R1E0 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
H2afb1S4R1E0 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
H2afb1S4R1E0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
H2afb1S4R1E0 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
H2afb1S4R1E0 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
H2afb1S4R1E0 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
H2afb1S4R1E0 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
H2afb1S4R1E0 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
H2afb1S4R1E0 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
H2afb1S4R1E0 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
H2afb1S4R1E0 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms