Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.63■■□□□ 1.85
Prpf40aQ9R1C7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Prpf40aQ9R1C7 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Prpf40aQ9R1C7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.62■■□□□ 1.85
Prpf40aQ9R1C7 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Prpf40aQ9R1C7 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Prpf40aQ9R1C7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Prpf40aQ9R1C7 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.61■■□□□ 1.85
Prpf40aQ9R1C7 Fezf2-202ENSMUST00000224023 1917 ntBASIC26.61■■□□□ 1.85
Prpf40aQ9R1C7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40aQ9R1C7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.6■■□□□ 1.85
Prpf40aQ9R1C7 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC26.6■■□□□ 1.85
Prpf40aQ9R1C7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40aQ9R1C7 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40aQ9R1C7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.59■■□□□ 1.85
Prpf40aQ9R1C7 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Prpf40aQ9R1C7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
Prpf40aQ9R1C7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Prpf40aQ9R1C7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Prpf40aQ9R1C7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.56■■□□□ 1.84
Prpf40aQ9R1C7 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Prpf40aQ9R1C7 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Prpf40aQ9R1C7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.54■■□□□ 1.84
Prpf40aQ9R1C7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
Prpf40aQ9R1C7 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Prpf40aQ9R1C7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.52■■□□□ 1.84
Prpf40aQ9R1C7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Prpf40aQ9R1C7 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Prpf40aQ9R1C7 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Prpf40aQ9R1C7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Prpf40aQ9R1C7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.5■■□□□ 1.83
Prpf40aQ9R1C7 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Prpf40aQ9R1C7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Prpf40aQ9R1C7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
Prpf40aQ9R1C7 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Prpf40aQ9R1C7 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Prpf40aQ9R1C7 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
Prpf40aQ9R1C7 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Prpf40aQ9R1C7 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Prpf40aQ9R1C7 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC26.46■■□□□ 1.83
Prpf40aQ9R1C7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Prpf40aQ9R1C7 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Prpf40aQ9R1C7 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Prpf40aQ9R1C7 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC26.44■■□□□ 1.82
Prpf40aQ9R1C7 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
Prpf40aQ9R1C7 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Prpf40aQ9R1C7 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Prpf40aQ9R1C7 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Prpf40aQ9R1C7 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Prpf40aQ9R1C7 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Prpf40aQ9R1C7 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.41■■□□□ 1.82
Prpf40aQ9R1C7 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
Prpf40aQ9R1C7 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC26.39■■□□□ 1.82
Prpf40aQ9R1C7 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Prpf40aQ9R1C7 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.39■■□□□ 1.81
Prpf40aQ9R1C7 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Prpf40aQ9R1C7 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Prpf40aQ9R1C7 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.38■■□□□ 1.81
Prpf40aQ9R1C7 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Prpf40aQ9R1C7 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Prpf40aQ9R1C7 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Prpf40aQ9R1C7 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Prpf40aQ9R1C7 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Prpf40aQ9R1C7 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
Prpf40aQ9R1C7 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Prpf40aQ9R1C7 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Prpf40aQ9R1C7 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Prpf40aQ9R1C7 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Prpf40aQ9R1C7 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Prpf40aQ9R1C7 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Prpf40aQ9R1C7 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Prpf40aQ9R1C7 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.3■■□□□ 1.8
Prpf40aQ9R1C7 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Prpf40aQ9R1C7 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Prpf40aQ9R1C7 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Prpf40aQ9R1C7 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Prpf40aQ9R1C7 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Prpf40aQ9R1C7 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Prpf40aQ9R1C7 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
Prpf40aQ9R1C7 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Prpf40aQ9R1C7 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Prpf40aQ9R1C7 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Prpf40aQ9R1C7 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Prpf40aQ9R1C7 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Prpf40aQ9R1C7 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.26■■□□□ 1.79
Prpf40aQ9R1C7 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Prpf40aQ9R1C7 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Prpf40aQ9R1C7 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Prpf40aQ9R1C7 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Prpf40aQ9R1C7 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Prpf40aQ9R1C7 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Prpf40aQ9R1C7 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.23■■□□□ 1.79
Prpf40aQ9R1C7 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Prpf40aQ9R1C7 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Prpf40aQ9R1C7 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Prpf40aQ9R1C7 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Prpf40aQ9R1C7 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Prpf40aQ9R1C7 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Prpf40aQ9R1C7 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Prpf40aQ9R1C7 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms