Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Lsm1Q8VC85 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Lsm1Q8VC85 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Lsm1Q8VC85 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Lsm1Q8VC85 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Lsm1Q8VC85 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Lsm1Q8VC85 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Lsm1Q8VC85 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
Lsm1Q8VC85 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Lsm1Q8VC85 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Lsm1Q8VC85 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.34■■□□□ 1.33
Lsm1Q8VC85 Pcf11-205ENSMUST00000208255 1720 ntBASIC23.33■■□□□ 1.33
Lsm1Q8VC85 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Lsm1Q8VC85 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Lsm1Q8VC85 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Lsm1Q8VC85 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.32■■□□□ 1.32
Lsm1Q8VC85 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Lsm1Q8VC85 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Lsm1Q8VC85 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Lsm1Q8VC85 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Lsm1Q8VC85 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Lsm1Q8VC85 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Lsm1Q8VC85 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Lsm1Q8VC85 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Lsm1Q8VC85 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lsm1Q8VC85 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Lsm1Q8VC85 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Lsm1Q8VC85 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.25■■□□□ 1.31
Lsm1Q8VC85 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Lsm1Q8VC85 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Lsm1Q8VC85 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Lsm1Q8VC85 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Lsm1Q8VC85 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Lsm1Q8VC85 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Lsm1Q8VC85 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC23.22■■□□□ 1.31
Lsm1Q8VC85 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Lsm1Q8VC85 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Lsm1Q8VC85 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Lsm1Q8VC85 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Lsm1Q8VC85 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Lsm1Q8VC85 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Lsm1Q8VC85 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Lsm1Q8VC85 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Lsm1Q8VC85 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.15■■□□□ 1.3
Lsm1Q8VC85 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Lsm1Q8VC85 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Lsm1Q8VC85 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Lsm1Q8VC85 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC23.12■■□□□ 1.29
Lsm1Q8VC85 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Lsm1Q8VC85 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Lsm1Q8VC85 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Lsm1Q8VC85 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Lsm1Q8VC85 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.11■■□□□ 1.29
Lsm1Q8VC85 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Lsm1Q8VC85 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Lsm1Q8VC85 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Lsm1Q8VC85 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Lsm1Q8VC85 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Lsm1Q8VC85 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Lsm1Q8VC85 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Lsm1Q8VC85 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Lsm1Q8VC85 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Lsm1Q8VC85 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
Lsm1Q8VC85 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
Lsm1Q8VC85 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Lsm1Q8VC85 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Lsm1Q8VC85 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.08■■□□□ 1.28
Lsm1Q8VC85 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Lsm1Q8VC85 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Lsm1Q8VC85 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Lsm1Q8VC85 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Lsm1Q8VC85 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Lsm1Q8VC85 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Lsm1Q8VC85 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Lsm1Q8VC85 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Lsm1Q8VC85 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Lsm1Q8VC85 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC23.04■■□□□ 1.28
Lsm1Q8VC85 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Lsm1Q8VC85 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Lsm1Q8VC85 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC23.02■■□□□ 1.28
Lsm1Q8VC85 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 Gm43863-201ENSMUST00000203822 1192 ntBASIC23.02■■□□□ 1.28
Lsm1Q8VC85 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Lsm1Q8VC85 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Lsm1Q8VC85 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Lsm1Q8VC85 Zfp131-205ENSMUST00000223812 663 ntBASIC23.01■■□□□ 1.27
Lsm1Q8VC85 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
Lsm1Q8VC85 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.01■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms