Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 Fezf2-202ENSMUST00000224023 1917 ntBASIC27.27■■□□□ 1.96
Smarca1Q6PGB8 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Smarca1Q6PGB8 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Smarca1Q6PGB8 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Smarca1Q6PGB8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Smarca1Q6PGB8 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Smarca1Q6PGB8 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
Smarca1Q6PGB8 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC27.23■■□□□ 1.95
Smarca1Q6PGB8 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Smarca1Q6PGB8 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC27.23■■□□□ 1.95
Smarca1Q6PGB8 AC157572.2-201ENSMUST00000226970 908 ntBASIC27.21■■□□□ 1.95
Smarca1Q6PGB8 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Smarca1Q6PGB8 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
Smarca1Q6PGB8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC27.18■■□□□ 1.94
Smarca1Q6PGB8 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Smarca1Q6PGB8 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Smarca1Q6PGB8 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Smarca1Q6PGB8 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Smarca1Q6PGB8 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Smarca1Q6PGB8 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Smarca1Q6PGB8 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Smarca1Q6PGB8 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Smarca1Q6PGB8 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Smarca1Q6PGB8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC27.09■■□□□ 1.93
Smarca1Q6PGB8 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
Smarca1Q6PGB8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
Smarca1Q6PGB8 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Smarca1Q6PGB8 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC27.09■■□□□ 1.93
Smarca1Q6PGB8 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Smarca1Q6PGB8 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Smarca1Q6PGB8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.92
Smarca1Q6PGB8 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Smarca1Q6PGB8 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Smarca1Q6PGB8 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Smarca1Q6PGB8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Smarca1Q6PGB8 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Smarca1Q6PGB8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Smarca1Q6PGB8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Smarca1Q6PGB8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Smarca1Q6PGB8 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Smarca1Q6PGB8 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Smarca1Q6PGB8 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
Smarca1Q6PGB8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Smarca1Q6PGB8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Smarca1Q6PGB8 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Smarca1Q6PGB8 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Smarca1Q6PGB8 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Smarca1Q6PGB8 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
Smarca1Q6PGB8 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Smarca1Q6PGB8 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.96■■□□□ 1.91
Smarca1Q6PGB8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.95■■□□□ 1.91
Smarca1Q6PGB8 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Smarca1Q6PGB8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Smarca1Q6PGB8 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.93■■□□□ 1.9
Smarca1Q6PGB8 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Smarca1Q6PGB8 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Smarca1Q6PGB8 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
Smarca1Q6PGB8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Smarca1Q6PGB8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Smarca1Q6PGB8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
Smarca1Q6PGB8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Smarca1Q6PGB8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Smarca1Q6PGB8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Smarca1Q6PGB8 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Smarca1Q6PGB8 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Smarca1Q6PGB8 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
Smarca1Q6PGB8 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Smarca1Q6PGB8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Smarca1Q6PGB8 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Smarca1Q6PGB8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Smarca1Q6PGB8 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Smarca1Q6PGB8 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Smarca1Q6PGB8 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Smarca1Q6PGB8 Gm8503-201ENSMUST00000118131 455 ntBASIC26.83■■□□□ 1.89
Smarca1Q6PGB8 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Smarca1Q6PGB8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.83■■□□□ 1.89
Smarca1Q6PGB8 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Smarca1Q6PGB8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
Smarca1Q6PGB8 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Smarca1Q6PGB8 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
Smarca1Q6PGB8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Smarca1Q6PGB8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Smarca1Q6PGB8 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.8■■□□□ 1.88
Smarca1Q6PGB8 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Smarca1Q6PGB8 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Smarca1Q6PGB8 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Smarca1Q6PGB8 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Smarca1Q6PGB8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Smarca1Q6PGB8 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Smarca1Q6PGB8 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
Smarca1Q6PGB8 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC26.78■■□□□ 1.88
Smarca1Q6PGB8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms