Protein–RNA interactions for Protein: Q640N4

Zfp248, Zinc finger protein 248, mousemouse

Predictions only

Length 576 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Zfp248Q640N4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Zfp248Q640N4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.39■□□□□ 0.53
Zfp248Q640N4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Zfp248Q640N4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Zfp248Q640N4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Zfp248Q640N4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Zfp248Q640N4 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Zfp248Q640N4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Zfp248Q640N4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Zfp248Q640N4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Zfp248Q640N4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Zfp248Q640N4 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Zfp248Q640N4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Zfp248Q640N4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Zfp248Q640N4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Zfp248Q640N4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Zfp248Q640N4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Zfp248Q640N4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Zfp248Q640N4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Zfp248Q640N4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Zfp248Q640N4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Zfp248Q640N4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Zfp248Q640N4 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Zfp248Q640N4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.32■□□□□ 0.52
Zfp248Q640N4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Zfp248Q640N4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Zfp248Q640N4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Zfp248Q640N4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Zfp248Q640N4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Zfp248Q640N4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Zfp248Q640N4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Zfp248Q640N4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Zfp248Q640N4 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Zfp248Q640N4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Zfp248Q640N4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Zfp248Q640N4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Zfp248Q640N4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Zfp248Q640N4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Zfp248Q640N4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Zfp248Q640N4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Zfp248Q640N4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Zfp248Q640N4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Zfp248Q640N4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.22■□□□□ 0.51
Zfp248Q640N4 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.21■□□□□ 0.51
Zfp248Q640N4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Zfp248Q640N4 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Zfp248Q640N4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Zfp248Q640N4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.2■□□□□ 0.5
Zfp248Q640N4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.2■□□□□ 0.5
Zfp248Q640N4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Zfp248Q640N4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Zfp248Q640N4 Zfp131-205ENSMUST00000223812 663 ntBASIC18.18■□□□□ 0.5
Zfp248Q640N4 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Zfp248Q640N4 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Zfp248Q640N4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Zfp248Q640N4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Zfp248Q640N4 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Zfp248Q640N4 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.16■□□□□ 0.5
Zfp248Q640N4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Zfp248Q640N4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Zfp248Q640N4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Zfp248Q640N4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Zfp248Q640N4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Zfp248Q640N4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Zfp248Q640N4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Zfp248Q640N4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Zfp248Q640N4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.13■□□□□ 0.49
Zfp248Q640N4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Zfp248Q640N4 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Zfp248Q640N4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Zfp248Q640N4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Zfp248Q640N4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.11■□□□□ 0.49
Zfp248Q640N4 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.11■□□□□ 0.49
Zfp248Q640N4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Zfp248Q640N4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Zfp248Q640N4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Zfp248Q640N4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Zfp248Q640N4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.08■□□□□ 0.48
Zfp248Q640N4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Zfp248Q640N4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.08■□□□□ 0.48
Zfp248Q640N4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.08■□□□□ 0.48
Zfp248Q640N4 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.08■□□□□ 0.48
Zfp248Q640N4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Zfp248Q640N4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Zfp248Q640N4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Zfp248Q640N4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Zfp248Q640N4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.06■□□□□ 0.48
Zfp248Q640N4 Gm9397-201ENSMUST00000200125 605 ntBASIC18.06■□□□□ 0.48
Zfp248Q640N4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms