Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Ddb1Q3U1J4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Ddb1Q3U1J4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Ddb1Q3U1J4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Ddb1Q3U1J4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Ddb1Q3U1J4 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Ddb1Q3U1J4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC32.14■■■□□ 2.74
Ddb1Q3U1J4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
Ddb1Q3U1J4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
Ddb1Q3U1J4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Ddb1Q3U1J4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC32.1■■■□□ 2.73
Ddb1Q3U1J4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC32.1■■■□□ 2.73
Ddb1Q3U1J4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Ddb1Q3U1J4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC32.06■■■□□ 2.72
Ddb1Q3U1J4 Gm6311-201ENSMUST00000073790 878 ntBASIC32.06■■■□□ 2.72
Ddb1Q3U1J4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ddb1Q3U1J4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
Ddb1Q3U1J4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC32.01■■■□□ 2.72
Ddb1Q3U1J4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ddb1Q3U1J4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ddb1Q3U1J4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Ddb1Q3U1J4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC31.98■■■□□ 2.71
Ddb1Q3U1J4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Ddb1Q3U1J4 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC31.96■■■□□ 2.71
Ddb1Q3U1J4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ddb1Q3U1J4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Ddb1Q3U1J4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Ddb1Q3U1J4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC31.92■■■□□ 2.7
Ddb1Q3U1J4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Ddb1Q3U1J4 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.91■■■□□ 2.7
Ddb1Q3U1J4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ddb1Q3U1J4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ddb1Q3U1J4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
Ddb1Q3U1J4 Gm6345-201ENSMUST00000180378 1691 ntBASIC31.88■■■□□ 2.69
Ddb1Q3U1J4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ddb1Q3U1J4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Ddb1Q3U1J4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC31.85■■■□□ 2.69
Ddb1Q3U1J4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC31.84■■■□□ 2.69
Ddb1Q3U1J4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ddb1Q3U1J4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Ddb1Q3U1J4 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Ddb1Q3U1J4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Ddb1Q3U1J4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Ddb1Q3U1J4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ddb1Q3U1J4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ddb1Q3U1J4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ddb1Q3U1J4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ddb1Q3U1J4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Ddb1Q3U1J4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ddb1Q3U1J4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Ddb1Q3U1J4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Ddb1Q3U1J4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Ddb1Q3U1J4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Ddb1Q3U1J4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Ddb1Q3U1J4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ddb1Q3U1J4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC31.67■■■□□ 2.66
Ddb1Q3U1J4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Ddb1Q3U1J4 Particl-201ENSMUST00000205370 1560 ntBASIC31.66■■■□□ 2.66
Ddb1Q3U1J4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Ddb1Q3U1J4 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Ddb1Q3U1J4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Ddb1Q3U1J4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Ddb1Q3U1J4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ddb1Q3U1J4 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ddb1Q3U1J4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ddb1Q3U1J4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ddb1Q3U1J4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Ddb1Q3U1J4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Ddb1Q3U1J4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms