Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Chmp6P0C0A3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
Chmp6P0C0A3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.31■■□□□ 1.8
Chmp6P0C0A3 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Chmp6P0C0A3 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Chmp6P0C0A3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Chmp6P0C0A3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Chmp6P0C0A3 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.29■■□□□ 1.8
Chmp6P0C0A3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.29■■□□□ 1.8
Chmp6P0C0A3 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.28■■□□□ 1.8
Chmp6P0C0A3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
Chmp6P0C0A3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Chmp6P0C0A3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Chmp6P0C0A3 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Chmp6P0C0A3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Chmp6P0C0A3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC26.24■■□□□ 1.79
Chmp6P0C0A3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Chmp6P0C0A3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Chmp6P0C0A3 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Chmp6P0C0A3 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.22■■□□□ 1.79
Chmp6P0C0A3 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chmp6P0C0A3 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Chmp6P0C0A3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Chmp6P0C0A3 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.2■■□□□ 1.78
Chmp6P0C0A3 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Chmp6P0C0A3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.2■■□□□ 1.78
Chmp6P0C0A3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.2■■□□□ 1.78
Chmp6P0C0A3 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Chmp6P0C0A3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Chmp6P0C0A3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Chmp6P0C0A3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.18■■□□□ 1.78
Chmp6P0C0A3 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.17■■□□□ 1.78
Chmp6P0C0A3 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Chmp6P0C0A3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Chmp6P0C0A3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.15■■□□□ 1.78
Chmp6P0C0A3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Chmp6P0C0A3 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Chmp6P0C0A3 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Chmp6P0C0A3 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.13■■□□□ 1.77
Chmp6P0C0A3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Chmp6P0C0A3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Chmp6P0C0A3 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Chmp6P0C0A3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Chmp6P0C0A3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Chmp6P0C0A3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Chmp6P0C0A3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Chmp6P0C0A3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
Chmp6P0C0A3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Chmp6P0C0A3 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.06■■□□□ 1.76
Chmp6P0C0A3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Chmp6P0C0A3 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Chmp6P0C0A3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC26.04■■□□□ 1.76
Chmp6P0C0A3 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Chmp6P0C0A3 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Chmp6P0C0A3 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
Chmp6P0C0A3 Amer2-203ENSMUST00000225247 2662 ntBASIC26.03■■□□□ 1.76
Chmp6P0C0A3 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Chmp6P0C0A3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
Chmp6P0C0A3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
Chmp6P0C0A3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Chmp6P0C0A3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Chmp6P0C0A3 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
Chmp6P0C0A3 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Chmp6P0C0A3 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Chmp6P0C0A3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Chmp6P0C0A3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Chmp6P0C0A3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Chmp6P0C0A3 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Chmp6P0C0A3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Chmp6P0C0A3 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Chmp6P0C0A3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Chmp6P0C0A3 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.97■■□□□ 1.75
Chmp6P0C0A3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Chmp6P0C0A3 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Chmp6P0C0A3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Chmp6P0C0A3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC25.96■■□□□ 1.75
Chmp6P0C0A3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25.95■■□□□ 1.75
Chmp6P0C0A3 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Chmp6P0C0A3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Chmp6P0C0A3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Chmp6P0C0A3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Chmp6P0C0A3 Gm9939-201ENSMUST00000067161 1154 ntBASIC25.94■■□□□ 1.74
Chmp6P0C0A3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Chmp6P0C0A3 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Chmp6P0C0A3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Chmp6P0C0A3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Chmp6P0C0A3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
Chmp6P0C0A3 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Chmp6P0C0A3 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
Chmp6P0C0A3 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC25.91■■□□□ 1.74
Chmp6P0C0A3 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Chmp6P0C0A3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Chmp6P0C0A3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Chmp6P0C0A3 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Chmp6P0C0A3 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms