Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv17A0A140T8P8 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Trbv17A0A140T8P8 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC18.45■□□□□ 0.54
Trbv17A0A140T8P8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.43■□□□□ 0.54
Trbv17A0A140T8P8 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv17A0A140T8P8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv17A0A140T8P8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv17A0A140T8P8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv17A0A140T8P8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Trbv17A0A140T8P8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv17A0A140T8P8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv17A0A140T8P8 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv17A0A140T8P8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv17A0A140T8P8 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv17A0A140T8P8 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Gm24970-201ENSMUST00000175582 82 ntBASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv17A0A140T8P8 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trbv17A0A140T8P8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Amer2-203ENSMUST00000225247 2662 ntBASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv17A0A140T8P8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv17A0A140T8P8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv17A0A140T8P8 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.35■□□□□ 0.53
Trbv17A0A140T8P8 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Trbv17A0A140T8P8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv17A0A140T8P8 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.34■□□□□ 0.53
Trbv17A0A140T8P8 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.34■□□□□ 0.53
Trbv17A0A140T8P8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv17A0A140T8P8 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv17A0A140T8P8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv17A0A140T8P8 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv17A0A140T8P8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv17A0A140T8P8 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.32■□□□□ 0.52
Trbv17A0A140T8P8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.32■□□□□ 0.52
Trbv17A0A140T8P8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv17A0A140T8P8 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv17A0A140T8P8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv17A0A140T8P8 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv17A0A140T8P8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
Trbv17A0A140T8P8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv17A0A140T8P8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv17A0A140T8P8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv17A0A140T8P8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv17A0A140T8P8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv17A0A140T8P8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv17A0A140T8P8 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv17A0A140T8P8 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.29■□□□□ 0.52
Trbv17A0A140T8P8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv17A0A140T8P8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv17A0A140T8P8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv17A0A140T8P8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv17A0A140T8P8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.27■□□□□ 0.51
Trbv17A0A140T8P8 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv17A0A140T8P8 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv17A0A140T8P8 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv17A0A140T8P8 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv17A0A140T8P8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.25■□□□□ 0.51
Trbv17A0A140T8P8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv17A0A140T8P8 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv17A0A140T8P8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv17A0A140T8P8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv17A0A140T8P8 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv17A0A140T8P8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv17A0A140T8P8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Trbv17A0A140T8P8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv17A0A140T8P8 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv17A0A140T8P8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trbv17A0A140T8P8 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv17A0A140T8P8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv17A0A140T8P8 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv17A0A140T8P8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv17A0A140T8P8 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC18.21■□□□□ 0.51
Trbv17A0A140T8P8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trbv17A0A140T8P8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv17A0A140T8P8 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms