Protein–RNA interactions for Protein: A0A075B656

Trav18, T cell receptor alpha variable 18 (Fragment), mousemouse

Predictions only

Length 109 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav18A0A075B656 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav18A0A075B656 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.86■□□□□ 0.77
Trav18A0A075B656 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Trav18A0A075B656 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav18A0A075B656 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav18A0A075B656 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trav18A0A075B656 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav18A0A075B656 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav18A0A075B656 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav18A0A075B656 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav18A0A075B656 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav18A0A075B656 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav18A0A075B656 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trav18A0A075B656 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav18A0A075B656 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav18A0A075B656 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trav18A0A075B656 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav18A0A075B656 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
Trav18A0A075B656 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav18A0A075B656 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trav18A0A075B656 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trav18A0A075B656 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav18A0A075B656 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav18A0A075B656 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
Trav18A0A075B656 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trav18A0A075B656 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav18A0A075B656 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trav18A0A075B656 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Trav18A0A075B656 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav18A0A075B656 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav18A0A075B656 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Trav18A0A075B656 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Trav18A0A075B656 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.74■□□□□ 0.75
Trav18A0A075B656 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav18A0A075B656 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trav18A0A075B656 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav18A0A075B656 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav18A0A075B656 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.74■□□□□ 0.75
Trav18A0A075B656 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.73■□□□□ 0.75
Trav18A0A075B656 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.73■□□□□ 0.75
Trav18A0A075B656 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav18A0A075B656 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.72■□□□□ 0.75
Trav18A0A075B656 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.72■□□□□ 0.75
Trav18A0A075B656 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav18A0A075B656 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Trav18A0A075B656 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav18A0A075B656 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav18A0A075B656 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav18A0A075B656 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav18A0A075B656 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trav18A0A075B656 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trav18A0A075B656 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.69■□□□□ 0.74
Trav18A0A075B656 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav18A0A075B656 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav18A0A075B656 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.68■□□□□ 0.74
Trav18A0A075B656 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav18A0A075B656 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.66■□□□□ 0.74
Trav18A0A075B656 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Trav18A0A075B656 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav18A0A075B656 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Trav18A0A075B656 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav18A0A075B656 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav18A0A075B656 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav18A0A075B656 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav18A0A075B656 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav18A0A075B656 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trav18A0A075B656 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav18A0A075B656 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav18A0A075B656 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav18A0A075B656 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav18A0A075B656 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav18A0A075B656 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Trav18A0A075B656 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav18A0A075B656 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav18A0A075B656 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trav18A0A075B656 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav18A0A075B656 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav18A0A075B656 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Trav18A0A075B656 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trav18A0A075B656 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav18A0A075B656 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav18A0A075B656 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav18A0A075B656 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav18A0A075B656 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.58■□□□□ 0.72
Trav18A0A075B656 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Trav18A0A075B656 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
Trav18A0A075B656 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav18A0A075B656 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav18A0A075B656 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav18A0A075B656 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav18A0A075B656 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trav18A0A075B656 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav18A0A075B656 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Trav18A0A075B656 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav18A0A075B656 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms