Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col13a1Q9R1N9 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col13a1Q9R1N9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col13a1Q9R1N9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col13a1Q9R1N9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Gm12382-201ENSMUST00000122005 922 ntBASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col13a1Q9R1N9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC15.11■□□□□ 0.01
Col13a1Q9R1N9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Gm5784-201ENSMUST00000179344 2478 ntBASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col13a1Q9R1N9 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Gm18032-201ENSMUST00000222541 538 ntBASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Col13a1Q9R1N9 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Col13a1Q9R1N9 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col13a1Q9R1N9 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col13a1Q9R1N9 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Gm37292-201ENSMUST00000192062 758 ntBASIC15.08■□□□□ 0
Col13a1Q9R1N9 Gm10138-203ENSMUST00000206952 366 ntBASIC15.08■□□□□ 0
Col13a1Q9R1N9 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col13a1Q9R1N9 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.08■□□□□ 0
Col13a1Q9R1N9 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col13a1Q9R1N9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Col13a1Q9R1N9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms