Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Hmgb4Q6P8W9 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb4Q6P8W9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Gm5417-201ENSMUST00000079706 384 ntBASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Hmgb4Q6P8W9 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Mir5122-201ENSMUST00000175004 89 ntBASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Gm43183-201ENSMUST00000200632 547 ntBASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Hmgb4Q6P8W9 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb4Q6P8W9 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb4Q6P8W9 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb4Q6P8W9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb4Q6P8W9 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms