Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.59■□□□□ 0.73
CtcfQ61164 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CtcfQ61164 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CtcfQ61164 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CtcfQ61164 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CtcfQ61164 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CtcfQ61164 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CtcfQ61164 Gm26571-201ENSMUST00000181399 666 ntBASIC19.58■□□□□ 0.72
CtcfQ61164 Gm42642-201ENSMUST00000200683 355 ntBASIC19.58■□□□□ 0.72
CtcfQ61164 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
CtcfQ61164 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CtcfQ61164 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CtcfQ61164 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CtcfQ61164 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CtcfQ61164 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.58■□□□□ 0.72
CtcfQ61164 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CtcfQ61164 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.57■□□□□ 0.72
CtcfQ61164 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CtcfQ61164 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CtcfQ61164 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CtcfQ61164 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CtcfQ61164 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.57■□□□□ 0.72
CtcfQ61164 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.57■□□□□ 0.72
CtcfQ61164 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CtcfQ61164 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CtcfQ61164 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.57■□□□□ 0.72
CtcfQ61164 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CtcfQ61164 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CtcfQ61164 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CtcfQ61164 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.56■□□□□ 0.72
CtcfQ61164 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.56■□□□□ 0.72
CtcfQ61164 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.56■□□□□ 0.72
CtcfQ61164 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.56■□□□□ 0.72
CtcfQ61164 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.56■□□□□ 0.72
CtcfQ61164 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CtcfQ61164 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.55■□□□□ 0.72
CtcfQ61164 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CtcfQ61164 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CtcfQ61164 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CtcfQ61164 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CtcfQ61164 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.55■□□□□ 0.72
CtcfQ61164 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CtcfQ61164 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CtcfQ61164 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CtcfQ61164 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CtcfQ61164 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CtcfQ61164 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CtcfQ61164 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.54■□□□□ 0.72
CtcfQ61164 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
CtcfQ61164 Gm5874-201ENSMUST00000096101 508 ntBASIC19.54■□□□□ 0.72
CtcfQ61164 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CtcfQ61164 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CtcfQ61164 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CtcfQ61164 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.53■□□□□ 0.72
CtcfQ61164 Gm18671-201ENSMUST00000214826 683 ntBASIC19.53■□□□□ 0.72
CtcfQ61164 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CtcfQ61164 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CtcfQ61164 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CtcfQ61164 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CtcfQ61164 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CtcfQ61164 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.52■□□□□ 0.72
CtcfQ61164 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
CtcfQ61164 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.52■□□□□ 0.72
CtcfQ61164 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CtcfQ61164 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CtcfQ61164 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.52■□□□□ 0.72
CtcfQ61164 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 8.9 ms