Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.95■□□□□ 0.94
Limch1Q3UH68 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.95■□□□□ 0.94
Limch1Q3UH68 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Dio3-201ENSMUST00000097228 1449 ntBASIC20.95■□□□□ 0.94
Limch1Q3UH68 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
Limch1Q3UH68 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.94■□□□□ 0.94
Limch1Q3UH68 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Limch1Q3UH68 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.94■□□□□ 0.94
Limch1Q3UH68 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.94■□□□□ 0.94
Limch1Q3UH68 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Limch1Q3UH68 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Limch1Q3UH68 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Limch1Q3UH68 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Limch1Q3UH68 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Limch1Q3UH68 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Limch1Q3UH68 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Limch1Q3UH68 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Limch1Q3UH68 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Limch1Q3UH68 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.89■□□□□ 0.93
Limch1Q3UH68 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Limch1Q3UH68 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Limch1Q3UH68 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.89■□□□□ 0.93
Limch1Q3UH68 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.89■□□□□ 0.93
Limch1Q3UH68 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Limch1Q3UH68 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.89■□□□□ 0.93
Limch1Q3UH68 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Limch1Q3UH68 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Limch1Q3UH68 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Limch1Q3UH68 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
Limch1Q3UH68 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms