Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col2a1P28481 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Col2a1P28481 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.31■□□□□ 0.84
Col2a1P28481 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
Col2a1P28481 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20.31■□□□□ 0.84
Col2a1P28481 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col2a1P28481 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.3■□□□□ 0.84
Col2a1P28481 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.3■□□□□ 0.84
Col2a1P28481 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col2a1P28481 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col2a1P28481 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.29■□□□□ 0.84
Col2a1P28481 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.29■□□□□ 0.84
Col2a1P28481 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.29■□□□□ 0.84
Col2a1P28481 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC20.29■□□□□ 0.84
Col2a1P28481 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.29■□□□□ 0.84
Col2a1P28481 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col2a1P28481 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col2a1P28481 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col2a1P28481 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col2a1P28481 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col2a1P28481 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col2a1P28481 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col2a1P28481 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col2a1P28481 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col2a1P28481 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
Col2a1P28481 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.28■□□□□ 0.84
Col2a1P28481 Gm18101-201ENSMUST00000215769 548 ntBASIC20.28■□□□□ 0.84
Col2a1P28481 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col2a1P28481 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col2a1P28481 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.27■□□□□ 0.84
Col2a1P28481 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Col2a1P28481 Gm13474-201ENSMUST00000122466 815 ntBASIC20.27■□□□□ 0.84
Col2a1P28481 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC20.27■□□□□ 0.84
Col2a1P28481 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col2a1P28481 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Col2a1P28481 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.26■□□□□ 0.83
Col2a1P28481 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Col2a1P28481 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col2a1P28481 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Col2a1P28481 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col2a1P28481 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Gm23634-201ENSMUST00000175071 91 ntBASIC20.25■□□□□ 0.83
Col2a1P28481 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC20.25■□□□□ 0.83
Col2a1P28481 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col2a1P28481 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Col2a1P28481 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.25■□□□□ 0.83
Col2a1P28481 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
Col2a1P28481 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col2a1P28481 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col2a1P28481 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col2a1P28481 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col2a1P28481 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Col2a1P28481 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col2a1P28481 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms