Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smc1aQ9CU62 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.95■□□□□ 0.78
Smc1aQ9CU62 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Smc1aQ9CU62 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Smc1aQ9CU62 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Smc1aQ9CU62 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Gm27275-201ENSMUST00000184318 272 ntBASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Smc1aQ9CU62 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Gm12896-201ENSMUST00000118430 226 ntBASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.9■□□□□ 0.78
Smc1aQ9CU62 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Smc1aQ9CU62 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.89■□□□□ 0.78
Smc1aQ9CU62 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.89■□□□□ 0.77
Smc1aQ9CU62 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms