Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 BC021767-201ENSMUST00000126387 1716 ntBASIC19.43■□□□□ 0.7
Lig3P97386 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.43■□□□□ 0.7
Lig3P97386 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Lig3P97386 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
Lig3P97386 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
Lig3P97386 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.42■□□□□ 0.7
Lig3P97386 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Lig3P97386 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.42■□□□□ 0.7
Lig3P97386 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.42■□□□□ 0.7
Lig3P97386 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig3P97386 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.42■□□□□ 0.7
Lig3P97386 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.42■□□□□ 0.7
Lig3P97386 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Lig3P97386 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.41■□□□□ 0.7
Lig3P97386 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Lig3P97386 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.41■□□□□ 0.7
Lig3P97386 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Gm10231-201ENSMUST00000181584 441 ntBASIC19.41■□□□□ 0.7
Lig3P97386 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Gm10175-202ENSMUST00000208752 441 ntBASIC19.41■□□□□ 0.7
Lig3P97386 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.41■□□□□ 0.7
Lig3P97386 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Fst-202ENSMUST00000223640 2612 ntBASIC19.41■□□□□ 0.7
Lig3P97386 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig3P97386 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
Lig3P97386 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.4■□□□□ 0.7
Lig3P97386 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Lig3P97386 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.4■□□□□ 0.7
Lig3P97386 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Gm44549-201ENSMUST00000208351 577 ntBASIC19.4■□□□□ 0.7
Lig3P97386 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
Lig3P97386 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lig3P97386 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Lig3P97386 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Lig3P97386 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lig3P97386 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Gm6433-201ENSMUST00000118634 875 ntBASIC19.39■□□□□ 0.69
Lig3P97386 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.39■□□□□ 0.69
Lig3P97386 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lig3P97386 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Lig3P97386 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.39■□□□□ 0.69
Lig3P97386 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.39■□□□□ 0.69
Lig3P97386 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lig3P97386 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.38■□□□□ 0.69
Lig3P97386 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.38■□□□□ 0.69
Lig3P97386 Gm43799-201ENSMUST00000201845 579 ntBASIC19.38■□□□□ 0.69
Lig3P97386 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.38■□□□□ 0.69
Lig3P97386 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Lig3P97386 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms