Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.65■□□□□ 0.74
Hmgb1P63158 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.65■□□□□ 0.74
Hmgb1P63158 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb1P63158 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Hmgb1P63158 Gm10849-201ENSMUST00000100397 618 ntBASIC19.64■□□□□ 0.73
Hmgb1P63158 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.64■□□□□ 0.73
Hmgb1P63158 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hmgb1P63158 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hmgb1P63158 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb1P63158 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.63■□□□□ 0.73
Hmgb1P63158 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb1P63158 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.63■□□□□ 0.73
Hmgb1P63158 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb1P63158 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
Hmgb1P63158 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb1P63158 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.63■□□□□ 0.73
Hmgb1P63158 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb1P63158 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
Hmgb1P63158 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.62■□□□□ 0.73
Hmgb1P63158 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.62■□□□□ 0.73
Hmgb1P63158 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb1P63158 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.61■□□□□ 0.73
Hmgb1P63158 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.61■□□□□ 0.73
Hmgb1P63158 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.61■□□□□ 0.73
Hmgb1P63158 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
Hmgb1P63158 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.61■□□□□ 0.73
Hmgb1P63158 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.61■□□□□ 0.73
Hmgb1P63158 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb1P63158 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.6■□□□□ 0.73
Hmgb1P63158 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Hmgb1P63158 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.6■□□□□ 0.73
Hmgb1P63158 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
Hmgb1P63158 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Hmgb1P63158 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb1P63158 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
Hmgb1P63158 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Hmgb1P63158 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.59■□□□□ 0.73
Hmgb1P63158 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.59■□□□□ 0.73
Hmgb1P63158 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb1P63158 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Hmgb1P63158 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Hmgb1P63158 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.58■□□□□ 0.73
Hmgb1P63158 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb1P63158 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms