Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Lire1P11260 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lire1P11260 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
Lire1P11260 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
Lire1P11260 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Lire1P11260 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lire1P11260 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Lire1P11260 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC16.83■□□□□ 0.28
Lire1P11260 Gm12527-201ENSMUST00000117967 564 ntBASIC16.83■□□□□ 0.28
Lire1P11260 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.83■□□□□ 0.28
Lire1P11260 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC16.83■□□□□ 0.28
Lire1P11260 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.83■□□□□ 0.28
Lire1P11260 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.83■□□□□ 0.28
Lire1P11260 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Lire1P11260 Gm6365-201ENSMUST00000054711 744 ntBASIC16.83■□□□□ 0.28
Lire1P11260 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lire1P11260 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Lire1P11260 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.82■□□□□ 0.28
Lire1P11260 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Lire1P11260 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.82■□□□□ 0.28
Lire1P11260 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Lire1P11260 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lire1P11260 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.82■□□□□ 0.28
Lire1P11260 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
Lire1P11260 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.82■□□□□ 0.28
Lire1P11260 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC16.81■□□□□ 0.28
Lire1P11260 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC16.81■□□□□ 0.28
Lire1P11260 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Lire1P11260 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Gm13148-201ENSMUST00000118892 745 ntBASIC16.81■□□□□ 0.28
Lire1P11260 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Gm5408-201ENSMUST00000197998 747 ntBASIC16.81■□□□□ 0.28
Lire1P11260 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.81■□□□□ 0.28
Lire1P11260 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.81■□□□□ 0.28
Lire1P11260 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Lire1P11260 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lire1P11260 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Lire1P11260 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Lire1P11260 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Gm13534-201ENSMUST00000121169 513 ntBASIC16.8■□□□□ 0.28
Lire1P11260 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lire1P11260 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.79■□□□□ 0.28
Lire1P11260 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lire1P11260 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lire1P11260 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Lire1P11260 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Lire1P11260 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lire1P11260 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms