Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Gm43338-201ENSMUST00000198617 2223 ntBASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav16d-dv11A0A075B617 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Gm43672-201ENSMUST00000199072 1731 ntBASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav16d-dv11A0A075B617 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Gm42501-201ENSMUST00000200220 1026 ntBASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav16d-dv11A0A075B617 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Trav16d-dv11A0A075B617 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Trav16d-dv11A0A075B617 AC121961.1-201ENSMUST00000218594 1779 ntBASIC13.15□□□□□ -0.31
Trav16d-dv11A0A075B617 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Cap2-205ENSMUST00000225824 1634 ntBASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trav16d-dv11A0A075B617 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Gm43808-201ENSMUST00000202534 2065 ntBASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav16d-dv11A0A075B617 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav16d-dv11A0A075B617 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav16d-dv11A0A075B617 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav16d-dv11A0A075B617 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Trav16d-dv11A0A075B617 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav16d-dv11A0A075B617 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms