Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 AC153975.1-201ENSMUST00000220087 926 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 AC153361.2-202ENSMUST00000220405 842 ntTSL 5 BASIC5.71□□□□□ -1.5
Col8a1Q00780 AC127242.4-201ENSMUST00000221242 470 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm9269-201ENSMUST00000221661 578 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 AC174797.2-203ENSMUST00000224017 716 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm6863-201ENSMUST00000052882 636 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Olfr1123-201ENSMUST00000054974 972 ntAPPRIS P2 BASIC5.71□□□□□ -1.5
Col8a1Q00780 1700013H16Rik-201ENSMUST00000067940 1224 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Olfr726-201ENSMUST00000072370 966 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Vmn1r178-201ENSMUST00000078593 915 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Clec9a-202ENSMUST00000088075 1020 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Olfr390-201ENSMUST00000092919 936 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Ino80d-201ENSMUST00000097718 13675 ntTSL 5 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Vmn2r105-201ENSMUST00000167382 2583 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm37310-201ENSMUST00000195237 2968 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm26648-201ENSMUST00000181925 5831 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 1110008L16Rik-201ENSMUST00000021411 3122 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Mad2l1-202ENSMUST00000116605 7557 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 D030068K23Rik-202ENSMUST00000180524 3677 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Tmem229b-202ENSMUST00000070174 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 4930431P03Rik-204ENSMUST00000228169 1967 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Rnf219-201ENSMUST00000022716 3420 ntAPPRIS P2 TSL 3 BASIC5.71□□□□□ -1.5
Col8a1Q00780 E330035G20Rik-202ENSMUST00000223323 3578 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Platr8-201ENSMUST00000146110 1349 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm19024-201ENSMUST00000194681 1319 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 AC139750.1-201ENSMUST00000223962 1300 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Psd3-203ENSMUST00000093468 1739 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
Col8a1Q00780 Gm43189-201ENSMUST00000196040 3069 ntBASIC5.71□□□□□ -1.5
Col8a1Q00780 Slco1a4-201ENSMUST00000032364 2252 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
Col8a1Q00780 Olfr1199-202ENSMUST00000124021 2967 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 AC153512.1-201ENSMUST00000218961 1603 ntTSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Dsg1c-201ENSMUST00000054128 4088 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Bmi1-202ENSMUST00000051929 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Exoc1-201ENSMUST00000049469 3272 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 B130024G19Rik-203ENSMUST00000190320 5451 ntTSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Ppp1r9a-212ENSMUST00000177456 3975 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Slc17a3-201ENSMUST00000039721 4276 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 AC122357.1-201ENSMUST00000221652 1515 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gtpbp4-204ENSMUST00000222098 8783 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 F2rl2-201ENSMUST00000022182 2502 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Vmn2r10-201ENSMUST00000079163 2544 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Cd36-204ENSMUST00000170051 3399 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Nup93-203ENSMUST00000211822 2674 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Smpx-203ENSMUST00000112521 898 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm13614-201ENSMUST00000117306 503 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm13728-201ENSMUST00000117471 400 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm15766-201ENSMUST00000118025 813 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm12639-201ENSMUST00000121400 493 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Clec5a-203ENSMUST00000129948 858 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm12082-201ENSMUST00000138164 600 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 4933401B06Rik-202ENSMUST00000142024 1219 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Nudt12os-202ENSMUST00000152750 849 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Mipepos-201ENSMUST00000155855 610 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm3221-201ENSMUST00000164869 440 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Sult2a4-202ENSMUST00000165167 964 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Rpl9-ps9-201ENSMUST00000173020 573 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm20429-202ENSMUST00000174168 820 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 S100a2-201ENSMUST00000179550 315 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm26969-201ENSMUST00000183203 648 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Prl8a8-201ENSMUST00000018389 927 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm27235-201ENSMUST00000184431 903 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm28209-201ENSMUST00000187956 775 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Slamf7-205ENSMUST00000194791 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm5995-201ENSMUST00000204107 1273 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Rpl7a-ps14-201ENSMUST00000205097 790 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm34783-201ENSMUST00000209159 303 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Olfr852-ps1-201ENSMUST00000212273 226 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC164881.1-201ENSMUST00000215648 664 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm26797-203ENSMUST00000216452 706 ntTSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 AC161245.1-201ENSMUST00000217207 740 ntTSL 3 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm4510-201ENSMUST00000218265 427 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Fkbp1a-ps2-201ENSMUST00000219474 311 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC155941.1-201ENSMUST00000220223 529 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC192334.2-201ENSMUST00000223087 1091 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC125064.1-201ENSMUST00000225801 295 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC154727.1-201ENSMUST00000226537 499 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 AC131068.1-201ENSMUST00000226891 482 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Rpl37a-201ENSMUST00000059980 558 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Vmn1r33-201ENSMUST00000079678 1036 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm1330-201ENSMUST00000081553 474 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm25739-201ENSMUST00000082886 107 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Olfr992-201ENSMUST00000099927 930 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Dock7-214ENSMUST00000205650 6297 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gpbp1l1-201ENSMUST00000030460 3588 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 AC132465.2-201ENSMUST00000218673 2728 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Bpifc-201ENSMUST00000061699 2714 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Gm10693-201ENSMUST00000144146 2037 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Zim1-201ENSMUST00000002336 7693 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Olfr1500-205ENSMUST00000216287 2178 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Atp13a4-208ENSMUST00000182627 4238 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Olfr727-202ENSMUST00000215317 2616 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 Copa-201ENSMUST00000027833 4351 ntTSL 5 BASIC5.7□□□□□ -1.5
Col8a1Q00780 AC158388.2-201ENSMUST00000223665 1314 ntBASIC5.7□□□□□ -1.5
Col8a1Q00780 Tarm1-202ENSMUST00000203020 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Myot-201ENSMUST00000025349 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 4930545L23Rik-201ENSMUST00000138303 2502 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Csde1-201ENSMUST00000029446 4318 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Ckap5-202ENSMUST00000099716 6574 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Col8a1Q00780 Ttc41-202ENSMUST00000075632 4366 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Col8a1Q00780 Nck1-201ENSMUST00000112874 1513 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms