Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm17661-201ENSMUST00000170317 270 ntBASIC16.34■□□□□ 0.21
Usf1Q61069 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usf1Q61069 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Usf1Q61069 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usf1Q61069 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC16.33■□□□□ 0.21
Usf1Q61069 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
Usf1Q61069 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Usf1Q61069 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
Usf1Q61069 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.33■□□□□ 0.2
Usf1Q61069 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Usf1Q61069 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.33■□□□□ 0.2
Usf1Q61069 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usf1Q61069 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usf1Q61069 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usf1Q61069 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Usf1Q61069 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usf1Q61069 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC16.32■□□□□ 0.2
Usf1Q61069 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.32■□□□□ 0.2
Usf1Q61069 Golph3-202ENSMUST00000226517 2359 ntBASIC16.32■□□□□ 0.2
Usf1Q61069 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usf1Q61069 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usf1Q61069 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Usf1Q61069 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Usf1Q61069 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Usf1Q61069 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Usf1Q61069 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.31■□□□□ 0.2
Usf1Q61069 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Gm16061-201ENSMUST00000122167 857 ntBASIC16.31■□□□□ 0.2
Usf1Q61069 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC16.31■□□□□ 0.2
Usf1Q61069 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.31■□□□□ 0.2
Usf1Q61069 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.31■□□□□ 0.2
Usf1Q61069 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.31■□□□□ 0.2
Usf1Q61069 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.31■□□□□ 0.2
Usf1Q61069 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usf1Q61069 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Usf1Q61069 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usf1Q61069 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Usf1Q61069 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Usf1Q61069 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Usf1Q61069 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.3■□□□□ 0.2
Usf1Q61069 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Usf1Q61069 Gm4974-201ENSMUST00000209974 875 ntBASIC16.3■□□□□ 0.2
Usf1Q61069 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usf1Q61069 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
Usf1Q61069 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usf1Q61069 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usf1Q61069 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Usf1Q61069 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Usf1Q61069 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usf1Q61069 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Usf1Q61069 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.29■□□□□ 0.2
Usf1Q61069 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usf1Q61069 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Usf1Q61069 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.29■□□□□ 0.2
Usf1Q61069 Gm17971-201ENSMUST00000190239 806 ntBASIC16.29■□□□□ 0.2
Usf1Q61069 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usf1Q61069 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms