Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Gm13146-201ENSMUST00000118508 780 ntBASIC17.12■□□□□ 0.33
Nr1h4Q60641 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.12■□□□□ 0.33
Nr1h4Q60641 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h4Q60641 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.11■□□□□ 0.33
Nr1h4Q60641 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1h4Q60641 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Gm45417-201ENSMUST00000209533 758 ntBASIC17.1■□□□□ 0.33
Nr1h4Q60641 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1h4Q60641 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Nr1h4Q60641 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.09■□□□□ 0.33
Nr1h4Q60641 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.09■□□□□ 0.33
Nr1h4Q60641 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1h4Q60641 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Nr1h4Q60641 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1h4Q60641 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1h4Q60641 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
Nr1h4Q60641 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1h4Q60641 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Gm13534-201ENSMUST00000121169 513 ntBASIC17.07■□□□□ 0.32
Nr1h4Q60641 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1h4Q60641 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms