Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.22■□□□□ 0.19
Rfx3P48381 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.22■□□□□ 0.19
Rfx3P48381 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.22■□□□□ 0.19
Rfx3P48381 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC16.22■□□□□ 0.19
Rfx3P48381 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC16.22■□□□□ 0.19
Rfx3P48381 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.22■□□□□ 0.19
Rfx3P48381 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Rfx3P48381 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Rfx3P48381 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC16.21■□□□□ 0.19
Rfx3P48381 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.21■□□□□ 0.19
Rfx3P48381 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.21■□□□□ 0.19
Rfx3P48381 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rfx3P48381 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Rfx3P48381 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Rfx3P48381 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.2■□□□□ 0.18
Rfx3P48381 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx3P48381 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Gm10033-202ENSMUST00000211874 928 ntBASIC16.2■□□□□ 0.18
Rfx3P48381 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Rfx3P48381 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.2■□□□□ 0.18
Rfx3P48381 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Rfx3P48381 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rfx3P48381 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.19■□□□□ 0.18
Rfx3P48381 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Gm7514-201ENSMUST00000209475 934 ntBASIC16.19■□□□□ 0.18
Rfx3P48381 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC16.19■□□□□ 0.18
Rfx3P48381 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.19■□□□□ 0.18
Rfx3P48381 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Rfx3P48381 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Rfx3P48381 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rfx3P48381 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.19■□□□□ 0.18
Rfx3P48381 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Rfx3P48381 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Rfx3P48381 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
Rfx3P48381 AC160393.1-201ENSMUST00000218378 1279 ntBASIC16.18■□□□□ 0.18
Rfx3P48381 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Rfx3P48381 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rfx3P48381 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
Rfx3P48381 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Gm6420-201ENSMUST00000193885 723 ntBASIC16.17■□□□□ 0.18
Rfx3P48381 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.17■□□□□ 0.18
Rfx3P48381 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rfx3P48381 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Rfx3P48381 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rfx3P48381 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms