Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.01■□□□□ 0.31
Msx1P13297 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.01■□□□□ 0.31
Msx1P13297 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.01■□□□□ 0.31
Msx1P13297 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.01■□□□□ 0.31
Msx1P13297 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17■□□□□ 0.31
Msx1P13297 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17■□□□□ 0.31
Msx1P13297 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Msx1P13297 Gm13158-201ENSMUST00000122007 736 ntBASIC17■□□□□ 0.31
Msx1P13297 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17■□□□□ 0.31
Msx1P13297 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Msx1P13297 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17■□□□□ 0.31
Msx1P13297 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17■□□□□ 0.31
Msx1P13297 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17■□□□□ 0.31
Msx1P13297 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Msx1P13297 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17■□□□□ 0.31
Msx1P13297 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msx1P13297 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Msx1P13297 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Msx1P13297 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msx1P13297 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.98■□□□□ 0.31
Msx1P13297 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.98■□□□□ 0.31
Msx1P13297 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Msx1P13297 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
Msx1P13297 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.98■□□□□ 0.31
Msx1P13297 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msx1P13297 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
Msx1P13297 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.97■□□□□ 0.31
Msx1P13297 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.97■□□□□ 0.31
Msx1P13297 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Msx1P13297 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.97■□□□□ 0.31
Msx1P13297 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msx1P13297 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Msx1P13297 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Msx1P13297 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Msx1P13297 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC16.96■□□□□ 0.31
Msx1P13297 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Msx1P13297 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.96■□□□□ 0.31
Msx1P13297 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Msx1P13297 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msx1P13297 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Msx1P13297 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Msx1P13297 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
Msx1P13297 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.95■□□□□ 0.3
Msx1P13297 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.95■□□□□ 0.3
Msx1P13297 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.95■□□□□ 0.3
Msx1P13297 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms