Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.3■□□□□ 0.36
Cacna1bO55017 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.3■□□□□ 0.36
Cacna1bO55017 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cacna1bO55017 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Cacna1bO55017 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.29■□□□□ 0.36
Cacna1bO55017 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Gm16061-201ENSMUST00000122167 857 ntBASIC17.29■□□□□ 0.36
Cacna1bO55017 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.29■□□□□ 0.36
Cacna1bO55017 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cacna1bO55017 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Cacna1bO55017 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.28■□□□□ 0.36
Cacna1bO55017 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cacna1bO55017 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.28■□□□□ 0.36
Cacna1bO55017 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.28■□□□□ 0.36
Cacna1bO55017 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cacna1bO55017 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cacna1bO55017 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Gm27704-201ENSMUST00000185094 107 ntBASIC17.27■□□□□ 0.36
Cacna1bO55017 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cacna1bO55017 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.27■□□□□ 0.36
Cacna1bO55017 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Cacna1bO55017 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cacna1bO55017 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
Cacna1bO55017 Gm12085-201ENSMUST00000119263 940 ntBASIC17.27■□□□□ 0.35
Cacna1bO55017 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cacna1bO55017 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cacna1bO55017 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Cacna1bO55017 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cacna1bO55017 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.27■□□□□ 0.35
Cacna1bO55017 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.27■□□□□ 0.35
Cacna1bO55017 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cacna1bO55017 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cacna1bO55017 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cacna1bO55017 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC17.26■□□□□ 0.35
Cacna1bO55017 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.26■□□□□ 0.35
Cacna1bO55017 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.26■□□□□ 0.35
Cacna1bO55017 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.26■□□□□ 0.35
Cacna1bO55017 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Mir2861-201ENSMUST00000175539 82 ntBASIC17.26■□□□□ 0.35
Cacna1bO55017 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cacna1bO55017 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.26■□□□□ 0.35
Cacna1bO55017 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.25■□□□□ 0.35
Cacna1bO55017 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Cacna1bO55017 Gm17807-201ENSMUST00000186869 298 ntBASIC17.25■□□□□ 0.35
Cacna1bO55017 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Cacna1bO55017 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cacna1bO55017 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Cacna1bO55017 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cacna1bO55017 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms