Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc28bQ8CEG5 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Ccdc28bQ8CEG5 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28bQ8CEG5 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28bQ8CEG5 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28bQ8CEG5 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Ccdc28bQ8CEG5 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28bQ8CEG5 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc28bQ8CEG5 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28bQ8CEG5 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Gm43173-201ENSMUST00000202246 593 ntBASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28bQ8CEG5 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms