Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.81□□□□□ -0.04
Sdc1P18828 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC14.81□□□□□ -0.04
Sdc1P18828 Gm12366-201ENSMUST00000121722 873 ntBASIC14.81□□□□□ -0.04
Sdc1P18828 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC14.81□□□□□ -0.04
Sdc1P18828 Gm5786-201ENSMUST00000085368 882 ntBASIC14.81□□□□□ -0.04
Sdc1P18828 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Sdc1P18828 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC14.81□□□□□ -0.04
Sdc1P18828 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 AC154231.1-201ENSMUST00000220564 2175 ntBASIC14.8□□□□□ -0.04
Sdc1P18828 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC14.8□□□□□ -0.04
Sdc1P18828 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Gm37519-201ENSMUST00000191687 2210 ntBASIC14.8□□□□□ -0.04
Sdc1P18828 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Sdc1P18828 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sdc1P18828 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Sdc1P18828 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Sdc1P18828 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC14.79□□□□□ -0.04
Sdc1P18828 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
Sdc1P18828 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Sdc1P18828 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sdc1P18828 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.78□□□□□ -0.04
Sdc1P18828 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sdc1P18828 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Sdc1P18828 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
Sdc1P18828 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sdc1P18828 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sdc1P18828 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC14.77□□□□□ -0.04
Sdc1P18828 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC14.77□□□□□ -0.04
Sdc1P18828 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Sdc1P18828 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Sdc1P18828 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.04
Sdc1P18828 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Sdc1P18828 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sdc1P18828 Gm10232-201ENSMUST00000089221 720 ntBASIC14.77□□□□□ -0.05
Sdc1P18828 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sdc1P18828 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sdc1P18828 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sdc1P18828 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sdc1P18828 AC121961.1-201ENSMUST00000218594 1779 ntBASIC14.77□□□□□ -0.05
Sdc1P18828 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Sdc1P18828 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms