Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC14.5□□□□□ -0.09
Cdx1P18111 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Cdx1P18111 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.5□□□□□ -0.09
Cdx1P18111 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.49□□□□□ -0.09
Cdx1P18111 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC14.49□□□□□ -0.09
Cdx1P18111 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC14.49□□□□□ -0.09
Cdx1P18111 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC14.49□□□□□ -0.09
Cdx1P18111 Gm7291-201ENSMUST00000199147 382 ntBASIC14.49□□□□□ -0.09
Cdx1P18111 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Cdx1P18111 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Cdx1P18111 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.48□□□□□ -0.09
Cdx1P18111 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Cdx1P18111 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Cdx1P18111 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Cdx1P18111 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Smad6-203ENSMUST00000179458 273 ntBASIC14.48□□□□□ -0.09
Cdx1P18111 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
Cdx1P18111 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
Cdx1P18111 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Cdx1P18111 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC14.48□□□□□ -0.09
Cdx1P18111 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Cdx1P18111 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Cdx1P18111 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Cdx1P18111 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC14.47□□□□□ -0.09
Cdx1P18111 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Cdx1P18111 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Cdx1P18111 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Cdx1P18111 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Gm45640-201ENSMUST00000210665 1896 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC14.46□□□□□ -0.09
Cdx1P18111 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC14.46□□□□□ -0.09
Cdx1P18111 Gm27405-201ENSMUST00000184201 112 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 AC099934.2-201ENSMUST00000196389 70 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 AC156953.1-201ENSMUST00000196953 70 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 AC157822.2-201ENSMUST00000200291 70 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 Gm42642-201ENSMUST00000200683 355 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Cdx1P18111 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC14.46□□□□□ -0.09
Cdx1P18111 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Cdx1P18111 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Cdx1P18111 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Cdx1P18111 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Cdx1P18111 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC14.46□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 102.7 ms