Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Pcdh1F7BJK1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdh1F7BJK1 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.21■□□□□ 0.18
Pcdh1F7BJK1 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdh1F7BJK1 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdh1F7BJK1 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdh1F7BJK1 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Pcdh1F7BJK1 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Gm13534-201ENSMUST00000121169 513 ntBASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdh1F7BJK1 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Pcdh1F7BJK1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdh1F7BJK1 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms